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HACCP guide

HACCP prerequisite programmes and good hygiene practices: the foundation under the plan

What prerequisite programmes and good hygiene practices mean in the Codex HACCP text, the Chapter One areas they cover, how the hazard analysis relies on them, a worked example, the records auditors sample and the mistakes to avoid.

  • Updated September 2026
  • 8-minute read
  • Part of the HACCP hub

Key points

  • HACCP prerequisite programmes are the everyday hygiene and operating conditions a HACCP plan stands on: premises, equipment, cleaning, pest control, people, suppliers, storage and transport.
  • The Codex General Principles of Food Hygiene set them out as good hygiene practices in Chapter One, before the HACCP system in Chapter Two, and say that properly applied prerequisite programmes should provide the foundation for an effective HACCP system.
  • The hazard analysis relies on these programmes. When one fails, a hazard the team judged to be under control is no longer controlled, and no CCP was designed to catch it.
  • Auditors judge prerequisite programmes by what they see on site and by records that show each programme is carried out, checked and improved.

What are HACCP prerequisite programmes?

Prerequisite programmes are the routines that keep a food operation clean, orderly and in control before anyone asks where the critical control points are. The Codex text defines them as programmes "including good hygiene practices, good agricultural practices and good manufacturing practices, as well as other practices and procedures such as training and traceability, that establish the basic environmental and operating conditions that set the foundation for implementation of a HACCP system."

Good hygiene practices, or GHPs, are the largest part of that family. Codex describes them as "fundamental measures and conditions applied at any step within the food chain to provide safe and suitable food." The terms are often used interchangeably, but GHPs are the hygiene measures, while prerequisite programmes also take in agricultural and manufacturing practice, training and traceability.

The current Codex text, revised in 2020 and again in 2022, also names a positive food safety culture as fundamental to any food hygiene system. Prerequisite programmes are where that culture shows: a handwash station that is used, a cleaning record signed by the person who cleaned, a supervisor who stops the line when a chiller alarm sounds.

The good hygiene practice areas in Codex Chapter One

Chapter One of CXC 1-1969 is organised under section titles that give a HACCP team a ready-made structure, followed in the table. The other two columns are Sterling's summary of common practice, not the Codex wording.

Codex Chapter One sectionTypical programme contentRecords an auditor expects
Primary productionControls at farm, harvest or catch that limit contamination at sourceSupplier assurance for primary producers, intake checks
Establishment: design of facilities and equipmentLayout, raw and cooked separation, hygienic surfaces, water, drainage, ventilationSite plan with flows and zones, water quality results, equipment specifications
Training and competenceHygiene induction, role training for line operators, cleaners and supervisors, refreshersTraining matrix, attendance and competence assessments
Establishment maintenance, cleaning and disinfection, and pest controlPlanned maintenance, cleaning methods, chemicals, pest proofing and monitoringMaintenance log, cleaning schedule with sign-off, pest contractor reports and trends
Personal hygieneIllness reporting, protective clothing, handwashing, visitorsHygiene rules, fitness-to-work declarations, hygiene inspections
Control of operationPurchased materials, time and temperature, cross-contamination and allergen cross-contact, lot identificationApproved supplier list, temperature logs, allergen matrix, traceability and recall tests
Product information and consumer awarenessLabelling, lot marking, storage and use instructions, allergen declarationsLabel approvals, start-up label checks
TransportationClean vehicles, transport temperature, separated loadsVehicle inspections, transport temperature records

Not every heading carries equal weight. A cold store spends most effort on temperature, transport and pest control; a bakery on allergens, foreign bodies and cleaning. Codex itself recognises that small or less developed businesses may lack onsite resources and expertise, so programmes should fit the business, not a large plant's manual.

A worked example: a chilled sandwich producer

A small producer makes chilled sandwiches for convenience stores. Its HACCP study names pathogens, allergens and foreign bodies as the main hazards, with the cook step for chicken fillings and chilled storage as CCPs. Everything else rests on prerequisite programmes, each mapped to the hazards it keeps down.

Prerequisite programmeHazard it keeps downDaily or periodic recordHow it is verified
Zoning between raw intake and the assembly roomCross-contamination of ready-to-eat fillingsDoor and clothing rules checked at shift startWeekly hygiene inspection by the QA lead
Cleaning and disinfection of the assembly linePathogen build-up on contact surfacesCleaning sign-off after each shiftSurface swabs on a rota, with trend review
Allergen handling and changeoverUndeclared allergensAllergen matrix, changeover and line clearance sign-offLabel check at every start-up, periodic allergen swabs
Supplier approval and intake checksContaminated or mislabelled raw materialsIntake temperature and specification checksAnnual supplier review, certificates on file
Personal hygiene and illness reportingContamination by food handlersReturn-to-work forms, handwash checksUnannounced observation by supervisors
Pest controlPhysical and microbial contamination by pestsContractor visit reportsQuarterly review of activity trends and actions

When a line swab comes back positive, the producer tightens the cleaning method, re-swabs, retrains the crew and records the outcome. The CCPs never saw the problem; the programme and its verification caught it, which is the evidence an auditor finds convincing.

What the record should show

A prerequisite programme needs three kinds of evidence. First, a short written method stating what is done, by whom and how often, in the operators' language. Second, records made at the time, for any day the auditor samples. Third, verification that the programme is followed and works: inspections, swab or water results, pest trends, complaints and the internal audit.

HACCP Principle 6 asks for verification that the whole system works as intended, and in practice that covers the foundation as well as the CCPs. The verification schedule, and what an internal auditor should test, are covered in HACCP internal audit and verification. Competence for cleaners, handlers and supervisors is covered in HACCP training.

How Sterling builds the foundation

Good hygiene practices that hold on the floor, then a HACCP plan on top of them.

Sterling's expert and experienced food safety consultants walk your premises against the Codex good hygiene practices before any HACCP worksheet is opened, so works, routines and records are agreed at the start. With Design™ your team writes the programmes with our structure and coaching; with Drive™ our consultants carry the agreed work alongside your supervisors. Schedules, checklists and verification results sit in Effivity, included with the engagement at no additional cost and used in 50+ countries. We ensure successful certification for our clients. Sterling does not certify: an independent certification body audits your system and issues the certificate.

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Common mistakes with prerequisite programmes

  • Treating them as paperwork before the real work. Teams rush the hygiene procedures to reach the HACCP study; the auditor starts on the floor, where that shows first.
  • Turning hygiene into CCPs. When the foundation feels weak, teams make handwashing or cleaning a CCP. These routines rarely have a measurable critical limit or a way to hold product at the moment of failure, so they belong in a well-verified programme instead.
  • Copying another site's manual. It names rooms, equipment and chemicals the auditor cannot find.
  • No link to the hazard analysis. If the worksheet dismisses a hazard as controlled by good hygiene, it should name which programme does it.
  • Records without review. Signed cleaning sheets with no trend analysis show activity, not control.

HACCP prerequisite programmes: questions buyers ask

What is the difference between a prerequisite programme and a CCP?

A prerequisite programme keeps general hygiene and operating conditions in place across the operation, while a CCP is a specific step where control is essential for a significant hazard. A CCP has validated critical limits, monitoring and defined corrective actions; a prerequisite programme has methods, records and verification.

Are GMP and good hygiene practices the same as prerequisite programmes?

They are part of them. Codex treats prerequisite programmes as the wider family that includes good hygiene practices, good manufacturing practices and good agricultural practices, plus training and traceability.

Which prerequisite programmes does a small food business need?

The ones its operation depends on, taken from the Codex Chapter One headings: for a small kitchen, usually cleaning, personal hygiene, pest control, temperature control, allergens and supplier checks.

Do prerequisite programmes have to be written down?

For certification, yes in practice: the auditor needs a method to audit against and records to sample. Keep both brief enough to be completed at the time.

Can a hazard be controlled by a prerequisite programme instead of a CCP?

Yes, where the hazard analysis concludes that the programme controls it adequately at that step. The worksheet should record that reasoning and name the programme, and verification should confirm the programme is working.

Are prerequisite programmes required by law?

In many markets the hygiene requirements behind them are, as in the European Union's food hygiene regulation. Check the food law that applies to your own operation.

HACCP implementation

HACCP requirements

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