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ISO 9001 guide

ISO 9001 Stage 1 and Stage 2 audits: what auditors check, day by day

Clause by clause: ISO 9001:2026 requirements: every clause explained →

What the certification body's auditor checks at the Stage 1 readiness review and at the Stage 2 audit, how a typical Stage 2 runs from opening meeting to closing meeting, how evidence is sampled and findings are raised, and who takes the certification decision.

  • Updated September 2026
  • 8-minute read
  • Part of the ISO 9001 hub

Key points

  • Stage 1, the certification body's readiness review, checks your documented information, scope, site, internal audit and management review. Stage 2 tests, at your site, whether the system is implemented and effective.
  • ISO/IEC 17021-1, which accredited certification bodies must follow, requires both stages for an initial certification.
  • Stage 2 follows a plan agreed in advance: opening meeting, top management, process audits on samples the auditor chooses, closing meeting.
  • Nonconformities are written against a specific requirement, with evidence, and discussed with you. The auditor recommends; people at the certification body who were not on the audit decide.

What each stage checks

At Stage 1 the auditor asks whether your quality management system is ready to be audited. At Stage 2 the auditor asks whether it works: whether what you planned is done across the whole scope and delivers the results you set.

Both stages are required by ISO/IEC 17021-1, the international standard for bodies that audit and certify management systems, against which accreditation bodies assess certification bodies. That is why accredited bodies in Manila and London run an initial ISO 9001 audit on the same pattern. Selecting a body is covered in choosing an ISO 9001 certification body, and the full route to the certificate in the certification process guide.

Stage 1: the readiness review

ISO/IEC 17021-1 sets out what Stage 1 must achieve. Read as a checklist, it tells you what the auditor will ask for.

Stage 1 objectiveIn an ISO 9001 systemHave ready
Review documented informationScope, policy, objectives, process interactions, required documented informationCurrent approved versions with owners
Evaluate site conditions and preparednessPremises, operations, shifts, off-site workAccess to all areas; process owners on hand
Review your understanding of the requirementsHow quality is measured and objectives trackedObjectives with targets, results and owners
Obtain scope information, including statutory and regulatory requirementsWhether the certificate wording matches what you doSites, activities and applicable legal requirements identified
Agree Stage 2 resources and detailsDates, sites, shifts, intervieweesDiaries of managers and process owners
Evaluate internal audits, management reviews and readinessAudit programme and reports; review recordCompleted reports and minutes, not only a schedule

The certification body must tell you beforehand which Stage 1 activities will be on site; site conditions are hard to judge from documents, so expect some time at your premises. Stage 1 ends with documented conclusions on your readiness and any areas of concern that could become nonconformities at Stage 2. It is not a gap analysis: the auditor names concerns but does not design the fix.

Between the stages

The certification body must take your need to resolve those concerns into account when setting the interval, and may revise its Stage 2 arrangements because of them. Close each with evidence. You receive the audit plan and the names of the audit team in advance, and the dates are agreed with you; a valid objection to a team member obliges the body to reconstitute the team.

Stage 2: implementation and effectiveness

Stage 2 evaluates implementation, including effectiveness, at your site or sites. ISO/IEC 17021-1 requires it to cover at least:

  • conformity with all the ISO 9001 requirements within your scope;
  • monitoring, measuring, reporting and review of performance against key objectives and targets;
  • meeting applicable statutory, regulatory and contractual requirements;
  • operational control of your processes;
  • internal audit and management review;
  • management responsibility for your policies.

Effectiveness is the difference. A followed procedure shows implementation; a process that achieves its planned results, or whose shortfalls are noticed and acted on, shows effectiveness. Auditors test it by following consequences: a complaint to its corrective action and on to whether the problem returned.

A typical Stage 2, day by day

The certification body sets Stage 2 audit time from your effective personnel, process complexity and sites, under accreditation rules; the cost guide explains those drivers. This illustration assumes three days, one auditor and one site; your audit plan sets the real order.

WhenWhat happensWho is neededWhat is sampled
Day 1, startOpening meeting: scope and plan confirmed; grading, communication, confidentiality and safety arrangementsManagement, process owners, guidesThe plan and changes since Stage 1
Day 1, morningTop management: context, policy, objectives, risks and opportunities, resources, management reviewSenior manager in scope; quality coordinatorObjectives and results, review minutes, Stage 1 concerns closed
Day 1, afternoonCustomer processes: enquiries, quotations, contract review, changesSales and customer serviceOrders picked by the auditor
Day 2, morningOperations at the point of work: planning, delivery, inspection, releaseSupervisors and operatorsInstructions in use, inspection records, nonconforming output
Day 2, afternoonPurchasing, suppliers, design if in scope, measuring equipmentPurchasing, engineering, maintenanceSupplier evaluations, design reviews, calibration
Day 3, morningCompetence, complaints, corrective action, customer satisfaction, internal auditHR, quality coordinator, internal auditorsTraining records, complaint files, proof that corrective actions worked
Day 3, afternoonAuditor prepares conclusions; closing meetingManagement and process owners; attendance recordedFindings, grading and deadlines presented

Top management comes first because policy, objectives and management review frame everything else; if leadership cannot explain the system's purpose, each process audit tends to find the same gap. Each auditor normally has a guide from your side, and observers must be agreed with the certification body beforehand.

How auditors sample the evidence

ISO/IEC 17021-1 requires evidence to be gathered by appropriate sampling and verified through interviews, observation of processes and activities, and review of documents and records. In practice:

  • The auditor chooses the sample from lists you provide: orders, complaints, suppliers, training records.
  • Trails cross departments, from enquiry to invoice, because problems collect at the hand-offs.
  • Answers are checked against records and, where possible, the work itself.

Sampling cuts both ways: a clean audit does not prove every process conforms, and one finding does not condemn a whole process. For multi-site organisations, accreditation rules also govern which sites are visited. The questions auditors typically put are in our audit questions guide.

How findings are raised

A nonconformity is recorded against a specific requirement of ISO 9001, with a clear statement of what is wrong and the objective evidence behind it. The auditor discusses it with you to confirm the evidence is accurate and understood; that is the time to produce a record the auditor has not seen, not to bargain over the grade. The auditor must not suggest the cause or the solution, a restraint that protects the certificate's impartiality.

  • Major nonconformity: affects the capability of the system to achieve its intended results.
  • Minor nonconformity: does not affect that capability.
  • Opportunity for improvement: not a nonconformity, recorded where the scheme allows, and never a way to soften one.

Differences the audit team leader cannot resolve are recorded and referred to the certification body. Closing nonconformities is covered in our nonconformities guide.

The closing meeting, the report and the decision

The closing meeting presents the conclusions, including the recommendation on certification. You must also be told that the evidence came from a sample, how findings are reported and graded, how nonconformities affect certification, the deadline for your correction and corrective action plan, the certification body's next steps, and how complaints and appeals work. The written report belongs to the certification body; it states whether the system conforms and is effective, records unresolved issues and carries the recommendation.

The recommendation is not the decision. Competent people at the certification body who did not conduct the audit decide, after confirming that the audit information is sufficient, that corrections and corrective actions for every major nonconformity have been reviewed, accepted and verified, and that plans for minor ones have been accepted. A major nonconformity not verified within six months of the last day of Stage 2 means another Stage 2. Certification then starts a three-year cycle, covered in our surveillance and recertification guide.

How Sterling prepares you for both stages

No surprises at Stage 1, and a Stage 2 your people can explain.

Before the certification body arrives, Sterling's consultants run the internal audit and management review with your team, test your documented information against the Stage 1 objectives and close every finding with evidence. Records sit in Effivity, included with the engagement at no additional cost, so any sample can be produced without a search. We ensure successful certification for our clients. The audit and the certification decision belong to the independent, accredited certification body; Sterling does not certify.

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Stage 1 and Stage 2 audits: questions buyers ask

Can Stage 1 and Stage 2 happen in the same visit?

Some certification bodies schedule them back to back for small organisations with simple processes. A Stage 1 concern then has no time to be fixed, and Stage 2 may have to be rearranged. Unless your system is plainly ready, leave a few weeks between them.

Will the auditor tell us how to fix a nonconformity?

No. The auditor describes what is wrong and the evidence, but may not suggest the cause or the remedy. Root cause and corrective action are your organisation's work; the certification body judges whether your response is acceptable.

Can we challenge a finding?

Yes, on the evidence: raise it when the auditor discusses the finding and bring the record that changes the picture. Unresolved differences are recorded and referred to the certification body, whose appeals process remains open to you.

Can Stage 1 be carried out remotely?

Partly, where the certification body's procedures and the accreditation rules on remote auditing allow. The body must tell you in advance which activities will be on site, and site conditions, one of the things Stage 1 must evaluate, are hard to judge from a screen.

If Stage 2 finds no nonconformities, is the system proven?

It is a strong result, not a guarantee. The audit was a sample, and the certification body must say so. Use your internal audits to probe the areas the certification auditor saw least of.

ISO 9001 implementation

ISO 9001 requirements

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